HL_7P7Q_037

3D structure

PDB id

7P7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUAAAUG

Length

7 nucleotides

Bulged bases

7P7Q|1|A|U|1534, 7P7Q|1|A|U|1538

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P7Q_037 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.2307

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7P7Q|1|A|U|1533
7P7Q|1|A|U|1534
7P7Q|1|A|A|1535
7P7Q|1|A|A|1536
7P7Q|1|A|A|1537
7P7Q|1|A|U|1538
7P7Q|1|A|G|1539

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2