HL_7PD3_010

3D structure

PDB id

7PD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCUUAG

Length

6 nucleotides

Bulged bases

7PD3|1|A|C|2036, 7PD3|1|A|A|2039

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PD3_010 not in the Motif Atlas

Homologous match to HL_4WF9_025

Geometric discrepancy: 0.1469

The information below is about HL_4WF9_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.2

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

7PD3|1|A|U|2035
7PD3|1|A|C|2036
7PD3|1|A|U|2037
7PD3|1|A|U|2038
7PD3|1|A|A|2039
7PD3|1|A|G|2040

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

39S ribosomal protein L15, mitochondrial