HL_7PD3_020

3D structure

PDB id

7PD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

7PD3|1|A|A|2430, 7PD3|1|A|A|2432, 7PD3|1|A|A|2434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PD3_020 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1336

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7PD3|1|A|C|2428
7PD3|1|A|A|2429
7PD3|1|A|A|2430
7PD3|1|A|C|2431
7PD3|1|A|A|2432
7PD3|1|A|C|2433
7PD3|1|A|A|2434
7PD3|1|A|G|2435

Current chains

Chain A

16S rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain 9

39S ribosomal protein L41, mitochondrial

Chain T

39S ribosomal protein L22, mitochondrial