3D structure

PDB id
7PJS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.35 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
7PJS|1|A|A|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7PJS_016 not in the Motif Atlas
Geometric match to HL_5J7L_150
Geometric discrepancy: 0.0547
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

7PJS|1|A|U|566
7PJS|1|A|U|567
7PJS|1|A|U|568
7PJS|1|A|U|569
7PJS|1|A|G|570
7PJS|1|A|U|571
7PJS|1|A|A|572
7PJS|1|A|U|573
7PJS|1|A|A|574
7PJS|1|A|A|575

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain D
50S ribosomal protein L3
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21

Coloring options:


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