HL_7PJS_025
3D structure
- PDB id
- 7PJS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- G(PSU)GCUAACGU
- Length
- 10 nucleotides
- Bulged bases
- 7PJS|1|A|U|958, 7PJS|1|A|C|961
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PJS_025 not in the Motif Atlas
- Homologous match to HL_5J7L_159
- Geometric discrepancy: 0.0856
- The information below is about HL_5J7L_159
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7PJS|1|A|G|954
7PJS|1|A|PSU|955
7PJS|1|A|G|956
7PJS|1|A|C|957
7PJS|1|A|U|958
7PJS|1|A|A|959
7PJS|1|A|A|960
7PJS|1|A|C|961
7PJS|1|A|G|962
7PJS|1|A|U|963
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain M
- 50S ribosomal protein L16
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