HL_7PJS_049

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

7PJS|1|A|A|2031, 7PJS|1|A|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJS_049 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0723

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7PJS|1|A|G|2027
7PJS|1|A|U|2028
7PJS|1|A|G|2029
7PJS|1|A|6MZ|2030
7PJS|1|A|A|2031
7PJS|1|A|G|2032
7PJS|1|A|A|2033
7PJS|1|A|U|2034
7PJS|1|A|G|2035
7PJS|1|A|C|2036

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain R

50S ribosomal protein L21