3D structure

PDB id
7PJS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.35 Å

Loop

Sequence
GCUCAAC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7PJS_084 not in the Motif Atlas
Homologous match to HL_4LFB_014
Geometric discrepancy: 0.0888
The information below is about HL_4LFB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_10453.3
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
9

Unit IDs

7PJS|1|a|G|617
7PJS|1|a|C|618
7PJS|1|a|U|619
7PJS|1|a|C|620
7PJS|1|a|A|621
7PJS|1|a|A|622
7PJS|1|a|C|623

Current chains

Chain a
16S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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