HL_7PJS_088

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUAC

Length

51 nucleotides

Bulged bases

7PJS|1|A|U|2132, 7PJS|1|A|C|2145, 7PJS|1|A|C|2146, 7PJS|1|A|A|2171, 7PJS|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7PJS|1|A|G|2124
7PJS|1|A|G|2125
7PJS|1|A|A|2126
7PJS|1|A|G|2127
7PJS|1|A|G|2128
7PJS|1|A|C|2129
7PJS|1|A|U|2130
7PJS|1|A|U|2131
7PJS|1|A|U|2132
7PJS|1|A|G|2133
7PJS|1|A|A|2134
7PJS|1|A|A|2135
7PJS|1|A|G|2136
7PJS|1|A|U|2137
7PJS|1|A|G|2138
7PJS|1|A|U|2139
7PJS|1|A|G|2140
7PJS|1|A|G|2141
7PJS|1|A|A|2142
7PJS|1|A|C|2143
7PJS|1|A|G|2144
7PJS|1|A|C|2145
7PJS|1|A|C|2146
7PJS|1|A|A|2147
7PJS|1|A|G|2148
7PJS|1|A|U|2149
7PJS|1|A|C|2150
7PJS|1|A|U|2151
7PJS|1|A|G|2152
7PJS|1|A|C|2153
7PJS|1|A|A|2154
7PJS|1|A|U|2155
7PJS|1|A|G|2156
7PJS|1|A|G|2157
7PJS|1|A|A|2158
7PJS|1|A|G|2159
7PJS|1|A|C|2160
7PJS|1|A|C|2161
7PJS|1|A|G|2162
7PJS|1|A|A|2163
7PJS|1|A|C|2164
7PJS|1|A|C|2165
7PJS|1|A|U|2166
7PJS|1|A|U|2167
7PJS|1|A|G|2168
7PJS|1|A|A|2169
7PJS|1|A|A|2170
7PJS|1|A|A|2171
7PJS|1|A|U|2172
7PJS|1|A|A|2173
7PJS|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains