HL_7PJT_067

3D structure

PDB id

7PJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

7PJT|1|A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJT_067 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.2419

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7PJT|1|A|G|2819
7PJT|1|A|A|2820
7PJT|1|A|A|2821
7PJT|1|A|G|2822
7PJT|1|A|A|2823
7PJT|1|A|C|2824
7PJT|1|A|G|2825
7PJT|1|A|A|2826
7PJT|1|A|C|2827

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17