HL_7PJT_104
3D structure
- PDB id
- 7PJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- G(5MU)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PJT_104 not in the Motif Atlas
- Homologous match to HL_1SER_002
- Geometric discrepancy: 0.2538
- The information below is about HL_1SER_002
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
7PJT|1|v|G|53
7PJT|1|v|5MU|54
7PJT|1|v|PSU|55
7PJT|1|v|C|56
7PJT|1|v|A|57
7PJT|1|v|A|58
7PJT|1|v|A|59
7PJT|1|v|U|60
7PJT|1|v|C|61
Current chains
- Chain v
- P-site tRNA(fMet)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: