HL_7PJT_105
3D structure
- PDB id
- 7PJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 7PJT|1|w|C|17, 7PJT|1|w|G|18, 7PJT|1|w|G|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PJT_105 not in the Motif Atlas
- Homologous match to HL_6JXM_001
- Geometric discrepancy: 0.1346
- The information below is about HL_6JXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
7PJT|1|w|C|13
7PJT|1|w|A|14
7PJT|1|w|G|15
7PJT|1|w|U|16
7PJT|1|w|C|17
7PJT|1|w|G|18
7PJT|1|w|G|19
7PJT|1|w|U|20
7PJT|1|w|A|21
7PJT|1|w|G|22
Current chains
- Chain w
- P-site fMet-Phe-tRNA(Phe)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: