HL_7PJU_084

3D structure

PDB id

7PJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJU_084 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1326

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7PJU|1|a|G|617
7PJU|1|a|C|618
7PJU|1|a|U|619
7PJU|1|a|C|620
7PJU|1|a|A|621
7PJU|1|a|A|622
7PJU|1|a|C|623

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

Ribosomal protein S4

Chain p

30S ribosomal protein S16