HL_7PJU_115

3D structure

PDB id

7PJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CAGAGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJU_115 not in the Motif Atlas

Homologous match to HL_6CZR_093

Geometric discrepancy: 0.3058

The information below is about HL_6CZR_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7PJU|1|a|C|1011
7PJU|1|a|A|1012
7PJU|1|a|G|1013
7PJU|1|a|A|1014
7PJU|1|a|G|1015
7PJU|1|a|A|1016
7PJU|1|a|U|1017
7PJU|1|a|G|1018

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L31

Chain n

30S ribosomal protein S14

Chain s

30S ribosomal protein S19