HL_7PJW_096

3D structure

PDB id

7PJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

7PJW|1|a|A|1167, 7PJW|1|a|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJW_096 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.3986

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7PJW|1|a|U|1165
7PJW|1|a|G|1166
7PJW|1|a|A|1167
7PJW|1|a|U|1168
7PJW|1|a|A|1169
7PJW|1|a|A|1170
7PJW|1|a|A|1171

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain u

30S ribosomal protein S21