HL_7PJW_110

3D structure

PDB id

7PJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

7PJW|1|A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJW_110 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.3375

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7PJW|1|A|U|1629
7PJW|1|A|A|1630
7PJW|1|A|G|1631
7PJW|1|A|A|1632
7PJW|1|A|G|1633
7PJW|1|A|A|1634
7PJW|1|A|A|1635
7PJW|1|A|U|1636
7PJW|1|A|A|1637

Current chains

Chain A

23S ribosomal RNA

Nearby chains