HL_7PJW_112

3D structure

PDB id

7PJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAGCGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJW_112 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.231

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7PJW|1|A|C|2855
7PJW|1|A|A|2856
7PJW|1|A|G|2857
7PJW|1|A|C|2858
7PJW|1|A|G|2859
7PJW|1|A|A|2860
7PJW|1|A|U|2861
7PJW|1|A|G|2862

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19