HL_7PJX_047

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CG(PSU)AAC(3TD)A(PSU)AACG

Length

13 nucleotides

Bulged bases

7PJX|1|A|A|1913, 7PJX|1|A|C|1914, 7PJX|1|A|A|1916

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7PJX|1|A|C|1909
7PJX|1|A|G|1910
7PJX|1|A|PSU|1911
7PJX|1|A|A|1912
7PJX|1|A|A|1913
7PJX|1|A|C|1914
7PJX|1|A|3TD|1915
7PJX|1|A|A|1916
7PJX|1|A|PSU|1917
7PJX|1|A|A|1918
7PJX|1|A|A|1919
7PJX|1|A|C|1920
7PJX|1|A|G|1921

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain w

Transfer RNA; tRNA

Chain z

mRNA