HL_7PJX_067

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

7PJX|1|A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJX_067 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.071

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7PJX|1|A|G|2819
7PJX|1|A|A|2820
7PJX|1|A|A|2821
7PJX|1|A|G|2822
7PJX|1|A|A|2823
7PJX|1|A|C|2824
7PJX|1|A|G|2825
7PJX|1|A|A|2826
7PJX|1|A|C|2827

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17