HL_7PJX_107
3D structure
- PDB id
- 7PJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PJX_107 not in the Motif Atlas
- Homologous match to HL_5E6M_003
- Geometric discrepancy: 0.3753
- The information below is about HL_5E6M_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.7
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
7PJX|1|w|G|53
7PJX|1|w|5MU|54
7PJX|1|w|PSU|55
7PJX|1|w|C|56
7PJX|1|w|G|57
7PJX|1|w|A|58
7PJX|1|w|U|59
7PJX|1|w|U|60
7PJX|1|w|C|61
Current chains
- Chain w
- P-site fMet-Phe-tRNA(Phe)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
Coloring options: