HL_7PJY_097

3D structure

PDB id

7PJY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PJY_097 not in the Motif Atlas

Geometric match to HL_4FRG_001

Geometric discrepancy: 0.3134

The information below is about HL_4FRG_001

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

7PJY|1|a|C|1314
7PJY|1|a|U|1315
7PJY|1|a|G|1316
7PJY|1|a|C|1317
7PJY|1|a|A|1318
7PJY|1|a|A|1319
7PJY|1|a|C|1320
7PJY|1|a|U|1321
7PJY|1|a|C|1322
7PJY|1|a|G|1323

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13

Chain n

30S ribosomal protein S14

Chain s

30S ribosomal protein S19