HL_7PKQ_003

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAAUACG

Length

7 nucleotides

Bulged bases

7PKQ|1|2|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PKQ_003 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.1276

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

7PKQ|1|2|C|17
7PKQ|1|2|A|18
7PKQ|1|2|A|19
7PKQ|1|2|U|20
7PKQ|1|2|A|21
7PKQ|1|2|C|22
7PKQ|1|2|G|23

Current chains

Chain 2

S2 rRNA

Nearby chains

Chain 1

S1 rRNA

Chain w

mS26

Chain z

mS34