HL_7PKQ_004
3D structure
- PDB id
- 7PKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of the Chlamydomonas reinhardtii mitoribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GCUUUUUUUUUUCAGC
- Length
- 16 nucleotides
- Bulged bases
- 7PKQ|1|2|U|66, 7PKQ|1|2|U|70, 7PKQ|1|2|U|71, 7PKQ|1|2|U|75, 7PKQ|1|2|G|78
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PKQ_004 not in the Motif Atlas
- Geometric match to HL_4YAZ_004
- Geometric discrepancy: 0.3831
- The information below is about HL_4YAZ_004
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_90436.3
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 46
Unit IDs
7PKQ|1|2|G|64
7PKQ|1|2|C|65
7PKQ|1|2|U|66
7PKQ|1|2|U|67
7PKQ|1|2|U|68
7PKQ|1|2|U|69
7PKQ|1|2|U|70
7PKQ|1|2|U|71
7PKQ|1|2|U|72
7PKQ|1|2|U|73
7PKQ|1|2|U|74
7PKQ|1|2|U|75
7PKQ|1|2|C|76
7PKQ|1|2|A|77
7PKQ|1|2|G|78
7PKQ|1|2|C|79
Current chains
- Chain 2
- S2 rRNA
Nearby chains
- Chain 1
- S1 rRNA
- Chain 4
- Small subunit ribosomal RNA; SSU rRNA
- Chain P
- mS107
- Chain q
- uS17m
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