HL_7PKQ_011

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PKQ_011 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.1491

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7PKQ|1|3|C|179
7PKQ|1|3|G|180
7PKQ|1|3|A|181
7PKQ|1|3|A|182
7PKQ|1|3|A|183
7PKQ|1|3|G|184

Current chains

Chain 3

S3 rRNA

Nearby chains

Chain 4

Small subunit ribosomal RNA; SSU rRNA

Chain o

uS15m

Chain r

bS18m