HL_7PKQ_012

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAUUAGAGACC

Length

11 nucleotides

Bulged bases

7PKQ|1|3|G|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PKQ_012 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.1381

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7PKQ|1|3|G|238
7PKQ|1|3|A|239
7PKQ|1|3|U|240
7PKQ|1|3|U|241
7PKQ|1|3|A|242
7PKQ|1|3|G|243
7PKQ|1|3|A|244
7PKQ|1|3|G|245
7PKQ|1|3|A|246
7PKQ|1|3|C|247
7PKQ|1|3|C|248

Current chains

Chain 3

S3 rRNA

Nearby chains

Chain 4

Small subunit ribosomal RNA; SSU rRNA