HL_7PKQ_014

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

7PKQ|1|3|C|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PKQ_014 not in the Motif Atlas

Homologous match to HL_6CZR_091

Geometric discrepancy: 0.3535

The information below is about HL_6CZR_091

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7PKQ|1|3|G|311
7PKQ|1|3|G|312
7PKQ|1|3|C|313
7PKQ|1|3|A|314
7PKQ|1|3|A|315
7PKQ|1|3|C|316

Current chains

Chain 3

S3 rRNA

Nearby chains

Chain 4

Small subunit ribosomal RNA; SSU rRNA

Chain o

uS15m