HL_7PKQ_019
3D structure
- PDB id
- 7PKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of the Chlamydomonas reinhardtii mitoribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CUGAAACUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7PKQ_019 not in the Motif Atlas
- Geometric match to HL_5J7L_142
- Geometric discrepancy: 0.1696
- The information below is about HL_5J7L_142
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_01609.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 18
Unit IDs
7PKQ|1|4|C|225
7PKQ|1|4|U|226
7PKQ|1|4|G|227
7PKQ|1|4|A|228
7PKQ|1|4|A|229
7PKQ|1|4|A|230
7PKQ|1|4|C|231
7PKQ|1|4|U|232
7PKQ|1|4|A|233
7PKQ|1|4|G|234
Current chains
- Chain 4
- S4 rRNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- Mitochondrial ribosomal protein S13
- Chain n
- Mitochondrial ribosomal protein S14
- Chain s
- uS19m
- Chain u
- Plastid-specific ribosomal protein 4
- Chain y
- mS33
Coloring options: