HL_7PKQ_022

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PKQ_022 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.1959

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7PKQ|1|4|G|426
7PKQ|1|4|G|427
7PKQ|1|4|G|428
7PKQ|1|4|A|429
7PKQ|1|4|A|430
7PKQ|1|4|C|431

Current chains

Chain 4

S4 rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA