HL_7PO0_001

3D structure

PDB id

7PO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

7PO0|1|A|U|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PO0_001 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.141

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7PO0|1|A|U|654
7PO0|1|A|U|655
7PO0|1|A|U|656
7PO0|1|A|G|657
7PO0|1|A|G|658
7PO0|1|A|U|659
7PO0|1|A|C|660
7PO0|1|A|C|661
7PO0|1|A|U|662
7PO0|1|A|A|663
7PO0|1|A|G|664

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial

Chain a

Putative ribosome-binding factor A, mitochondrial