HL_7PWG_005

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCCGAGGG

Length

8 nucleotides

Bulged bases

7PWG|1|1|G|166

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.2889

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7PWG|1|1|C|160
7PWG|1|1|C|161
7PWG|1|1|C|162
7PWG|1|1|G|163
7PWG|1|1|A|164
7PWG|1|1|G|165
7PWG|1|1|G|166
7PWG|1|1|G|167

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain C

Ribosomal protein L4

Chain Y

Ribosomal protein L26

Chain e

Ribosomal protein L32