HL_7PWG_017

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCUGCG

Length

6 nucleotides

Bulged bases

7PWG|1|1|U|483, 7PWG|1|1|C|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_017 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.2749

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

7PWG|1|1|C|481
7PWG|1|1|C|482
7PWG|1|1|U|483
7PWG|1|1|G|484
7PWG|1|1|C|485
7PWG|1|1|G|486

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain L

60S ribosomal protein L13

Chain a

Ribosomal protein L27a