HL_7PWG_029

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UGAAGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_029 not in the Motif Atlas

Homologous match to HL_5TBW_033

Geometric discrepancy: 0.2744

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7PWG|1|1|U|1227
7PWG|1|1|G|1228
7PWG|1|1|A|1229
7PWG|1|1|A|1230
7PWG|1|1|G|1231
7PWG|1|1|A|1232

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37