HL_7PWG_033

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGGCGCCCCGG

Length

11 nucleotides

Bulged bases

7PWG|1|1|C|1352, 7PWG|1|1|G|1353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_033 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1467

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7PWG|1|1|C|1344
7PWG|1|1|G|1345
7PWG|1|1|G|1346
7PWG|1|1|C|1347
7PWG|1|1|G|1348
7PWG|1|1|C|1349
7PWG|1|1|C|1350
7PWG|1|1|C|1351
7PWG|1|1|C|1352
7PWG|1|1|G|1353
7PWG|1|1|G|1354

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain R

Ribosomal protein L19

Chain U

Ribosomal protein eL22