HL_7PWG_037

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UCAGCAG

Length

7 nucleotides

Bulged bases

7PWG|1|1|C|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_037 not in the Motif Atlas

Homologous match to HL_8C3A_042

Geometric discrepancy: 0.1208

The information below is about HL_8C3A_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7PWG|1|1|U|1493
7PWG|1|1|C|1494
7PWG|1|1|A|1495
7PWG|1|1|G|1496
7PWG|1|1|C|1497
7PWG|1|1|A|1498
7PWG|1|1|G|1499

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain R

Ribosomal protein L19