HL_7PWG_038

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

7PWG|1|1|U|1556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_038 not in the Motif Atlas

Geometric match to HL_5TBW_043

Geometric discrepancy: 0.0905

The information below is about HL_5TBW_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7PWG|1|1|C|1554
7PWG|1|1|C|1555
7PWG|1|1|U|1556
7PWG|1|1|C|1557
7PWG|1|1|G|1558
7PWG|1|1|G|1559

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain p

Ribosomal protein L37a