HL_7PWG_042

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCACCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_042 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.314

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7PWG|1|1|G|1652
7PWG|1|1|C|1653
7PWG|1|1|A|1654
7PWG|1|1|C|1655
7PWG|1|1|C|1656
7PWG|1|1|C|1657

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain A

Ribosomal protein L2

Chain N

Ribosomal protein L15