HL_7PWG_046

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7PWG|1|1|A|1859, 7PWG|1|1|A|1860, 7PWG|1|1|C|1861

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_046 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.102

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7PWG|1|1|G|1856
7PWG|1|1|G|1857
7PWG|1|1|G|1858
7PWG|1|1|A|1859
7PWG|1|1|A|1860
7PWG|1|1|C|1861
7PWG|1|1|G|1862
7PWG|1|1|G|1863
7PWG|1|1|G|1864
7PWG|1|1|C|1865

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B

Ribosomal protein L3

Chain e

Ribosomal protein L32