HL_7PWG_048

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGUCGCGC

Length

8 nucleotides

Bulged bases

7PWG|1|1|C|2007, 7PWG|1|1|C|2009, 7PWG|1|1|G|2010

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_048 not in the Motif Atlas

Geometric match to HL_3AKZ_010

Geometric discrepancy: 0.3672

The information below is about HL_3AKZ_010

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

7PWG|1|1|G|2004
7PWG|1|1|G|2005
7PWG|1|1|U|2006
7PWG|1|1|C|2007
7PWG|1|1|G|2008
7PWG|1|1|C|2009
7PWG|1|1|G|2010
7PWG|1|1|C|2011

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain A

Ribosomal protein L2

Chain G

60S ribosomal protein L7a

Chain X

Ribosomal protein L23A