HL_7PWG_054

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_054 not in the Motif Atlas

Homologous match to HL_5TBW_059

Geometric discrepancy: 0.122

The information below is about HL_5TBW_059

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7PWG|1|1|C|2167
7PWG|1|1|G|2168
7PWG|1|1|A|2169
7PWG|1|1|A|2170
7PWG|1|1|A|2171
7PWG|1|1|G|2172

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain D

Ribosomal protein L5

Chain T

Ribosomal protein L21

Chain o

Ribosomal protein L44