HL_7PWG_058

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_058 not in the Motif Atlas

Homologous match to HL_5TBW_063

Geometric discrepancy: 0.1042

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7PWG|1|1|U|2342
7PWG|1|1|U|2343
7PWG|1|1|G|2344
7PWG|1|1|U|2345
7PWG|1|1|U|2346
7PWG|1|1|C|2347
7PWG|1|1|A|2348

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B

Ribosomal protein L3