HL_7PWG_064

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAGGACCAC

Length

9 nucleotides

Bulged bases

7PWG|1|1|A|2616

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PWG_064 not in the Motif Atlas

Geometric match to HL_7RQB_068

Geometric discrepancy: 0.1432

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7PWG|1|1|G|2615
7PWG|1|1|A|2616
7PWG|1|1|G|2617
7PWG|1|1|G|2618
7PWG|1|1|A|2619
7PWG|1|1|C|2620
7PWG|1|1|C|2621
7PWG|1|1|A|2622
7PWG|1|1|C|2623

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B

Ribosomal protein L3

Chain P

Ribosomal protein L17