HL_7PZY_005

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

7PZY|1|1|C|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0506

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7PZY|1|1|U|193
7PZY|1|1|U|194
7PZY|1|1|G|195
7PZY|1|1|G|196
7PZY|1|1|A|197
7PZY|1|1|A|198
7PZY|1|1|C|199
7PZY|1|1|A|200

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 9

Ribosomal 60S subunit protein L26B

Chain AF

Ribosomal 60S subunit protein L32

Chain l

Ribosomal 60S subunit protein L4B