HL_7PZY_041

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

7PZY|1|1|C|1789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_041 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.0536

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

7PZY|1|1|C|1788
7PZY|1|1|C|1789
7PZY|1|1|U|1790
7PZY|1|1|U|1791
7PZY|1|1|G|1792

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AQ

Ribosomal 60S subunit protein L43A

Chain j

Ribosomal 60S subunit protein L2A