HL_7PZY_061

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_061 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.0581

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7PZY|1|1|U|2716
7PZY|1|1|G|2717
7PZY|1|1|A|2718
7PZY|1|1|A|2719
7PZY|1|1|A|2720
7PZY|1|1|G|2721

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

Ribosomal 60S subunit protein L21A

Chain m

Ribosomal 60S subunit protein L5