HL_7PZY_089

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7PZY|1|A|A|414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_089 not in the Motif Atlas

Geometric match to HL_6QN3_003

Geometric discrepancy: 0.1063

The information below is about HL_6QN3_003

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

7PZY|1|A|C|412
7PZY|1|A|C|413
7PZY|1|A|A|414
7PZY|1|A|A|415
7PZY|1|A|G|416
7PZY|1|A|G|417

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 6

Ribosomal 60S subunit protein L23B

Chain H

40S ribosomal protein S6