HL_7PZY_091

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_091 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.0977

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7PZY|1|A|A|518
7PZY|1|A|A|519
7PZY|1|A|U|520
7PZY|1|A|G|521
7PZY|1|A|U|522
7PZY|1|A|A|523
7PZY|1|A|A|524
7PZY|1|A|A|525
7PZY|1|A|U|526
7PZY|1|A|A|527
7PZY|1|A|C|528
7PZY|1|A|C|529
7PZY|1|A|U|530

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain K

Ribosomal 40S subunit protein S9B

Chain Z

40S ribosomal protein S24