HL_7PZY_109

3D structure

PDB id

7PZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant Candida albicans 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PZY_109 not in the Motif Atlas

Geometric match to HL_4V88_217

Geometric discrepancy: 0.3629

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

7PZY|1|A|U|1382
7PZY|1|A|U|1383
7PZY|1|A|U|1384
7PZY|1|A|C|1385
7PZY|1|A|A|1386
7PZY|1|A|A|1387
7PZY|1|A|G|1388

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain S

Ribosomal 40S subunit protein S17B

Chain d

Ribosomal 40S subunit protein S28B