HL_7Q0R_099

3D structure

PDB id

7Q0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Candida albicans 80S ribosome in complex with blasticidin s

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q0R_099 not in the Motif Atlas

Geometric match to HL_4V88_207

Geometric discrepancy: 0.065

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7Q0R|1|A|C|922
7Q0R|1|A|G|923
7Q0R|1|A|A|924
7Q0R|1|A|A|925
7Q0R|1|A|A|926
7Q0R|1|A|G|927

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain O

Ribosomal 40S subunit protein S13

Chain b

40S ribosomal protein S26