HL_7Q4K_057

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

G(PSU)GCUAACGU

Length

10 nucleotides

Bulged bases

7Q4K|1|BA|U|958, 7Q4K|1|BA|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q4K_057 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.0873

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7Q4K|1|BA|G|954
7Q4K|1|BA|PSU|955
7Q4K|1|BA|G|956
7Q4K|1|BA|C|957
7Q4K|1|BA|U|958
7Q4K|1|BA|A|959
7Q4K|1|BA|A|960
7Q4K|1|BA|C|961
7Q4K|1|BA|G|962
7Q4K|1|BA|U|963

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BM

50S ribosomal protein L16