HL_7Q4K_058

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q4K_058 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.0946

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7Q4K|1|BA|G|978
7Q4K|1|BA|A|979
7Q4K|1|BA|A|980
7Q4K|1|BA|A|981
7Q4K|1|BA|C|982
7Q4K|1|BA|A|983
7Q4K|1|BA|A|984
7Q4K|1|BA|C|985

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BR

50S ribosomal protein L21

Chain BZ

50S ribosomal protein L30