HL_7Q4K_106

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG(H2U)CGG(H2U)AG

Length

10 nucleotides

Bulged bases

7Q4K|1|D3|C|17, 7Q4K|1|D3|G|18, 7Q4K|1|D3|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Q4K_106 not in the Motif Atlas

Homologous match to HL_3WFS_001

Geometric discrepancy: 0.2494

The information below is about HL_3WFS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7Q4K|1|D3|C|13
7Q4K|1|D3|A|14
7Q4K|1|D3|G|15
7Q4K|1|D3|H2U|16
7Q4K|1|D3|C|17
7Q4K|1|D3|G|18
7Q4K|1|D3|G|19
7Q4K|1|D3|H2U|20
7Q4K|1|D3|A|21
7Q4K|1|D3|G|22

Current chains

Chain D3

Phe-tRNA (E site)

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA